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Navigation: Home \ Education \ Other \ SBW - Systems Biology Workbench

SBW - Systems Biology Workbench

 2.11.0   by SBW Development Team

Vista Compatible
Software Description:
The Systems Biology Workbench (SBW), is a software framework that allows heterogeneous application components-written in diverse programming languages and running on different platforms-to communicate and use each others' capabilities via a fast binary encoded-message system. ... Download SBW - Systems Biology Workbench


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Released: August 11, 2014
Filesize: 63.40 MB
Platform: Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64
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SBW - Systems Biology Workbench

- Releases History
Software: SBW - Systems Biology Workbench 2.11.0
Date Released: Aug 11, 2014
Status: New Release
Release Notes: Jarnac comes up with an altered front-end, that will make it easier to work with it. It features also additional script commands .
JDesigner has been updated to work on newer Windows versions (7-8.1). It also can now load and save model parameters from / to external files. And it features a new plugin system.
Since our last official release, the SBML Level 3 Layout Package has finally been officially accepted, this release supports that final version as well. Similarly, SED-ML Level 1 Version 2 has been released, and with the Simulation Tool those files can be executed. Broken down into individual applications we have:
Layout Viewer / SBW Auto Layout: Support for SBML Level 3 Layout Package
SBW Simulation Tool: Support for all SBML levels, and SED-ML Level 1 Version 2. First experiments such as Parameter Scans can also be exported. It also automatically displays targets of SBML Events / Rules in the list of selected elements, when loading models.
Software: SBW - Systems Biology Workbench 2.10.0
Date Released: Mar 11, 2014
Status: New Release
Release Notes: Jarnac comes up with an altered front-end, that will make it easier to work with it. It features also additional script commands .
JDesigner has been updated to work on newer Windows versions (7-8.1). It also can now load and save model parameters from / to external files. And it features a new plugin system.
Since our last official release, the SBML Level 3 Layout Package has finally been officially accepted, this release supports that final version as well. Similarly, SED-ML Level 1 Version 2 has been released, and with the Simulation Tool those files can be executed. Broken down into individual applications we have:
Layout Viewer / SBW Auto Layout: Support for SBML Level 3 Layout Package
SBW Simulation Tool: Support for all SBML levels, and SED-ML Level 1 Version 2. First experiments such as Parameter Scans can also be exported. It also automatically displays targets of SBML Events / Rules in the list of selected elements, when loading models.
Software: SBW - Systems Biology Workbench 2.9.0
Date Released: Feb 14, 2012
Status: New Release
Release Notes: SBML Layout:
· Reading Support for SBML Layout Extension (for SBML L3)
· (at the moment the library only writes annotations though)
· Stability and performance improvements for Layout Viewer.
· SBGN upgrade

Bug Fix:
· Global Render Information were not correctly read

Stability:
Now works even independently of SBW SED-ML:
· Support for Kisao Terms (full lookup and browsing of the hierarchy).

Bug Fixes for error correction facility RoadRunner:
· BugFix: non integral stoichiometry for L1 models
· BugFix: model refused to load when non-L3 model used ids in speciesreferences
· BugFix: L1 model with local parameters refused to load
· BugFix: L1 model with non-integral stoichiometry was incorrect


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