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Picard2.27.2 by Sourceforge |
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Software Description:
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...
type: Open Source
Download Picardcategories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate Add to Download Basket Report virus or spyware |
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| Software Info | |
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Best Vista Download periodically updates pricing and software information of Picard full version from the publisher,
but some information may be out-of-date. You should confirm all information. Software piracy is theft, using crack, warez passwords, patches, serial numbers, registration codes, key generator, keymaker or keygen for Picard license key is illegal and prevent future development of Picard. Download links are directly from our mirrors or publisher's website, Picard torrent files or shared files from rapidshare, yousendit or megaupload are not allowed! |
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| Released: | May 25, 2022 |
| Filesize: | 16.60 MB |
| Platform: | Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11 |
| Install | Instal And Uninstall |
| Add Your Review or Windows Vista Compatibility Report |
Picard- Releases History |
| Software: | Picard 2.27.2 |
| Date Released: | May 25, 2022 |
| Status: | New Release |
| Software: | Picard 2.20.7 |
| Date Released: | Sep 16, 2019 |
| Status: | New Release |
| Release Notes: | Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests. Updating gradle to 5.6 (#1380) Updating NIO dependency and fixing a dependency issue (#1391) Update to htsjdk 2.20.3 (#1381) Extend travis build matrix to separate Barclay tests from legacy tests. (#952) PO-18867 Catch NaN Percent_Duplication edge case (#1389) |
| Software: | Picard 1.119 |
| Date Released: | Sep 2, 2014 |
| Status: | New Release |
| Release Notes: | Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates. Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set. Modified Casava18ReadNameEncoder to correctly display filter status. SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments. CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively. Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle. FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams. Fixed a bug in BCF2Writer where it was double-closing the output stream. Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF. |
Most popular java open source in CAD downloads for Vista |
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ASDN - Agile Supply Demand Networks 1.218 download by Petri Helo
... architecture design and performance management. ASDN software is Open Source and developed by University of Vaasa, Finland and ...
type: Open Source
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categories: design logistics networks, analyze logistics networks, develop logistics networks, create, design, analyze |
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GenomeView 2450 download by Thomas Abeel
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, ...
type: Open Source
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categories: genome visualization, annotation editor, view genome file, viewer, view, visualization |
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Cytoscape x64 3.10.0 download by Cytoscape Consortium
Cytoscape x64 is an open source bioinformatics software platform for visualizing molecular interaction networks ... may be developed by anyone using the Cytoscape open API based on Java™ technology and plugin community ...
type: Open Source
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categories: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology |
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JDet 1.4.1 download by Thilo Muth
JDet is a multiplatform software for the interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of tools and features we consider ...
type: Open Source
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categories: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment |
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SCaVis 2.3 download by Dr. Sergei Chekanov
... scientists, engineers and students. The program incorporates many open-source software packages into a coherent interface using the ... fully multiplatform and runs on any platform where Java is installed. As a Java application, SCaVis takes ...
type: Freeware
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categories: data-analysis framework, data manipulation, data plotting, analyze, analysis, analyzer |
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Integrated Genome Browser 7.0.4 B15225 download by Integrated Genome Browser Team
... the sequence itself. IGB is implemented using the Java programming language and should run on any computer. IGB is an open source, publicly-funded project, but it did not start out ...
type: Freeware
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categories: view microarray design, microarray design viewer, explore genome-scale data, visualization, view, viewer |
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Celera Genome Browser 5.1 download by Russell Turner
... annotation of the human genome, and released as open source in 2006. ...
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Energy2D 2.6 download by Concord Consortium
... 7), Mac OS X, and Linux, provided that Java (Version 5 or higher) is installed and enabled. ... energy simulations. Your simulations can be deployed as Java applets that run within a browser or—in the ...
type: Open Source
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categories: heat flow simulation, simulate mass flow, analyze heat flow, simulate, simulator, simulation |
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Maps coloring 1.9 download by Mario Stefanutti
Maps coloring is a small, easy to use, Java based application specially designed to help you find ... considered so far. When coloring maps using the Java application each color can play a different instruments ...
type: Open Source
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categories: analyze four color problem, solve four color problem, pencil and paper proof, analysis, analyze, solve |
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MZmine 2.52 download by MZmine Team
MZmine 2 is an open-source project delivering a software for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in ...
type: Open Source
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categories: analyze mass spectrometry data, mass spectrometry data analyzer, compile raw data, analysis, analyze, analyzer |
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