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Picard2.27.2 by Sourceforge |
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Software Description:
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...
type: Open Source
Download Picardcategories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate Add to Download Basket Report virus or spyware |
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| Software Info | |
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Best Vista Download periodically updates pricing and software information of Picard full version from the publisher,
but some information may be out-of-date. You should confirm all information. Software piracy is theft, using crack, warez passwords, patches, serial numbers, registration codes, key generator, keymaker or keygen for Picard license key is illegal and prevent future development of Picard. Download links are directly from our mirrors or publisher's website, Picard torrent files or shared files from rapidshare, yousendit or megaupload are not allowed! |
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| Released: | May 25, 2022 |
| Filesize: | 16.60 MB |
| Platform: | Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11 |
| Install | Instal And Uninstall |
| Add Your Review or Windows Vista Compatibility Report |
Picard- Releases History |
| Software: | Picard 2.27.2 |
| Date Released: | May 25, 2022 |
| Status: | New Release |
| Software: | Picard 2.20.7 |
| Date Released: | Sep 16, 2019 |
| Status: | New Release |
| Release Notes: | Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests. Updating gradle to 5.6 (#1380) Updating NIO dependency and fixing a dependency issue (#1391) Update to htsjdk 2.20.3 (#1381) Extend travis build matrix to separate Barclay tests from legacy tests. (#952) PO-18867 Catch NaN Percent_Duplication edge case (#1389) |
| Software: | Picard 1.119 |
| Date Released: | Sep 2, 2014 |
| Status: | New Release |
| Release Notes: | Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates. Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set. Modified Casava18ReadNameEncoder to correctly display filter status. SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments. CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively. Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle. FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams. Fixed a bug in BCF2Writer where it was double-closing the output stream. Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF. |
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DXF Export Java 7 download by CADSoftTools
Cross-platform developer Java library for exporting CAD entities, along with their ... line styles and other important properties. DXF Export Java with source code and working demos will help you get
type: Shareware ($900.00)
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categories: DXF, Java, dxf in java, export dxf java, dxf export java, java dxf export, java dxf exporter, Export, Exporter, CAD, library, sdk, AutoCAD, output |
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ASDN - Agile Supply Demand Networks 1.218 download by Petri Helo
... design and performance management. ASDN software is Open Source and developed by University of Vaasa, Finland and ABB Operations Development Group. ...
type: Open Source
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categories: design logistics networks, analyze logistics networks, develop logistics networks, create, design, analyze |
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GenomeView 2450 download by Thomas Abeel
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, ...
type: Open Source
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categories: genome visualization, annotation editor, view genome file, viewer, view, visualization |
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SDMetrics 2.5 download by Jürgen Wüst
... the design stage, before they are committed to source code. Extensible set of design measures and ... engineering tools that produce XMI files from C++, Java, Delphi, or Smalltalk source code, .NET assemblies, etc., ...
type: Freeware
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categories: analyze structural property, design metrics, establish benchmark, analyzer, analyze, measurement |
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JigCell for Windows 7.1.0 download by Jason Zwolak
... an effort to develop and maintain an open source modeling environment for computational biology. The goal of this project is to support building and testing models for studying complex biochemical ...
type: Open Source
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categories: development environment, computational biology development, biochemical regulatory system, development, environment, biology |
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Cytoscape x64 3.10.0 download by Cytoscape Consortium
Cytoscape x64 is an open source bioinformatics software platform for visualizing molecular interaction networks ... anyone using the Cytoscape open API based on Java™ technology and plugin community development is encouraged. Most ...
type: Open Source
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categories: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology |
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JDet 1.4.1 download by Thilo Muth
JDet is a multiplatform software for the interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of tools and features we consider ...
type: Open Source
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categories: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment |
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Java Graticule 3D 3.5.20161106 download by Michael Losler
JAG3D is a tool to estimate geodetic 1d, 2d and 3d-networks by a least-square-adjustment called Gauß-Markov-Model. Moreover, the software supports deformation-analysis. Add-ons are coordinate-transformation (CoordTrans) or the Form-Fitting-Toolbox. Geodetic Network ...
type: Open Source
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categories: estimate geodetic network, geodetic network estimator, deformation analysis, geodetic network, estimator, estimation |
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SCaVis 2.3 download by Dr. Sergei Chekanov
... fully multiplatform and runs on any platform where Java is installed. As a Java application, SCaVis takes the full advantage of multicore ... be used with several scripting languages for the Java platform, such as Jython (the Python programming language) ...
type: Freeware
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categories: data-analysis framework, data manipulation, data plotting, analyze, analysis, analyzer |
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Mobile Atlas Creator 2.2.1 download by Fredrik Moller
... known as TrekBuddy Atlas Creator) is an open source (GPL) program which creates offline atlases for GPS ... image with calibration MAP file for OziExplorer. As source for an offline atlas Mobile Atlas Creator can ...
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