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Picard2.27.2 by Sourceforge |
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Software Description:
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...
type: Open Source
Download Picardcategories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate Add to Download Basket Report virus or spyware |
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| Software Info | |
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Best Vista Download periodically updates pricing and software information of Picard full version from the publisher,
but some information may be out-of-date. You should confirm all information. Software piracy is theft, using crack, warez passwords, patches, serial numbers, registration codes, key generator, keymaker or keygen for Picard license key is illegal and prevent future development of Picard. Download links are directly from our mirrors or publisher's website, Picard torrent files or shared files from rapidshare, yousendit or megaupload are not allowed! |
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| Released: | May 25, 2022 |
| Filesize: | 16.60 MB |
| Platform: | Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11 |
| Install | Instal And Uninstall |
| Add Your Review or Windows Vista Compatibility Report |
Picard- Releases History |
| Software: | Picard 2.27.2 |
| Date Released: | May 25, 2022 |
| Status: | New Release |
| Software: | Picard 2.20.7 |
| Date Released: | Sep 16, 2019 |
| Status: | New Release |
| Release Notes: | Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests. Updating gradle to 5.6 (#1380) Updating NIO dependency and fixing a dependency issue (#1391) Update to htsjdk 2.20.3 (#1381) Extend travis build matrix to separate Barclay tests from legacy tests. (#952) PO-18867 Catch NaN Percent_Duplication edge case (#1389) |
| Software: | Picard 1.119 |
| Date Released: | Sep 2, 2014 |
| Status: | New Release |
| Release Notes: | Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates. Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set. Modified Casava18ReadNameEncoder to correctly display filter status. SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments. CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively. Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle. FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams. Fixed a bug in BCF2Writer where it was double-closing the output stream. Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF. |
Most popular java tool in CAD downloads for Vista |
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SDMetrics 2.5 download by Jürgen Wüst
... to a design problem. Interoperability with UML tools: · SDMetrics is designed to work with all UML modeling tools with XMI export. SDMetrics supports all XMI ... to deal with proprietary UML metamodel extensions, and tools that deviate from XMI standards. · Use SDMetrics ...
type: Freeware
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categories: analyze structural property, design metrics, establish benchmark, analyzer, analyze, measurement |
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ASDN - Agile Supply Demand Networks 1.218 download by Petri Helo
... analyzing and developing logistics networks. This rapid modelling tool should help decision-making in network architecture design and performance management. ASDN software is Open Source and developed by University of Vaasa, ...
type: Open Source
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categories: design logistics networks, analyze logistics networks, develop logistics networks, create, design, analyze |
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Mobile Atlas Creator 2.2.1 download by Fredrik Moller
Mobile Atlas Creator (formerly known as TrekBuddy Atlas Creator) is an open source (GPL) program which creates offline atlases for GPS handhelds and cell phone applications like TrekBuddy, AndNav and other ...
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GenomeView 2450 download by Thomas Abeel
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, ...
type: Open Source
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categories: genome visualization, annotation editor, view genome file, viewer, view, visualization |
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Celera Genome Browser 5.1 download by Russell Turner
The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006. ...
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Energy2D 2.6 download by Concord Consortium
... radiation. Students can use it as an inquiry tool to explore and investigate heat and mass flows ... 7), Mac OS X, and Linux, provided that Java (Version 5 or higher) is installed and enabled. ...
type: Open Source
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categories: heat flow simulation, simulate mass flow, analyze heat flow, simulate, simulator, simulation |
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Maps coloring 1.9 download by Mario Stefanutti
Maps coloring is a small, easy to use, Java based application specially designed to help you find ... considered so far. When coloring maps using the Java application each color can play a different instruments ...
type: Open Source
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categories: analyze four color problem, solve four color problem, pencil and paper proof, analysis, analyze, solve |
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JDet 1.4.1 download by Thilo Muth
... alignments and structures. It contains the set of tools and features we consider critical for the daily work with this kind of data, and that previously were disseminated in different ...
type: Open Source
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categories: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment |
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ARINC 1.6 download by Hervé Girod
... CDS (or ARINC 661 Server), coded in the Java language in order to facilitate the understanding of the ARINC 661 standard, prototype ARINC 661 concepts and architectures, etc… This project ...
type: Open Source
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categories: study ARINC 661 standard, prototype ARINC 661 concept, ARINC 661 Server, study, analyze, server |
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Java Graticule 3D 3.5.20161106 download by Michael Losler
JAG3D is a tool to estimate geodetic 1d, 2d and 3d-networks by a least-square-adjustment called Gauß-Markov-Model. Moreover, the software supports deformation-analysis. Add-ons are coordinate-transformation (CoordTrans) or the Form-Fitting-Toolbox. Geodetic ...
type: Open Source
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categories: estimate geodetic network, geodetic network estimator, deformation analysis, geodetic network, estimator, estimation |
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